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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79281471_79281682_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79281471 - 79281682
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TGTCTGATAATC
Flanking Amino Acid:
KRKYWWKNCKMMIMMGVICA
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
85
0.79
0.7
77
31.7
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
45.7
-0.3
2.2
61.1
38.2

Associated Gene:

Gene:
VAMP1
Ensembl Gene ID:
ENSAPLG00000013048
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013586
79281387 - 79282911
1525