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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79281842_79282580_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79281842 - 79282580
Intron Length:
739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTAGC
5'SS Class:
major
3'SS Sequence:
CTTCCTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TTTACCATGATA
Flanking Amino Acid:
LQQTQAQVEEVVDIMRVNVD
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
68.3
42.9
Major BPS
74
0.6
1
65.6
41.1
Major PPT
84.7
0.78
0.7
76.8
31.9
Minor 5ss
31
-2.2
2.8
37.5
39.9
Minor BPS
62.8
0.39
1.6
76.38
34.2

Associated Gene:

Gene:
VAMP1
Ensembl Gene ID:
ENSAPLG00000013048
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013586
79281387 - 79282911
1525