Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79287285_79287719_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79287285 - 79287719

Intron Length:

435

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TGCCTCTCTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAC

U12 Branch Point Sequence:

AAGTCCTCACCT

Flanking Amino Acid:

REDALELMMQVASRHSNELP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

71.2

34.2

Major BPS

72.4

0.56

73.5

32.5

Major PPT

78.2

0.63

0.8

69.3

36.9

Minor 5ss

27.1

-2.6

3.2

41.6

Minor BPS

55.5

0.25

1.9

72.06

44.4

Associated Gene:

Gene:

NCAPD2

Ensembl Gene ID:

ENSAPLG00000013121

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013732

79286407 - 79307055

20649