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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79288887_79288971_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79288887 - 79288971
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTTCC
5'SS Class:
major
3'SS Sequence:
TTTCGTCCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TTTTCCCTGACC
Flanking Amino Acid:
TALTHYDHLFSATLKITQML
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
66
34.4
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
71.7
0.49
1
71.5
33.4
Minor 5ss
38.2
-1.3
2.8
50.7
39.7
Minor BPS
75.5
0.79
1.6
87.16
29.5

Associated Gene:

Gene:
NCAPD2
Ensembl Gene ID:
ENSAPLG00000013121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013732
79286407 - 79307055
20649