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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79289325_79289641_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79289325 - 79289641
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCAACAA
U12 Branch Point Sequence:
GGTCCAACAACT
Flanking Amino Acid:
SVLLRHLDGESYVMRNAILA
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
79
37.9
Major BPS
44.8
-0.3
1
46.9
34.5
Major PPT
85.1
0.79
0.7
79.7
25.6
Minor 5ss
42.7
-0.8
3
57.9
46.7
Minor BPS
45.5
-0.2
2
66.64
42.6

Associated Gene:

Gene:
NCAPD2
Ensembl Gene ID:
ENSAPLG00000013121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013732
79286407 - 79307055
20649