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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79289840_79290383_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79289840 - 79290383
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CATTGTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTCTCGATAACT
Flanking Amino Acid:
QLFTRIVHGKALPLTQFQSV
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
67.5
0.39
1
57.8
42.9
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
59.1
0.37
2.3
84.81
41.7

Associated Gene:

Gene:
NCAPD2
Ensembl Gene ID:
ENSAPLG00000013121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013732
79286407 - 79307055
20649