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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79290519_79291049_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79290519 - 79291049
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTGGCATCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
GCTTAAGTAATG
Flanking Amino Acid:
FLSNNPFSCKLSCADLADPL
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
77.3
37.6
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
66.4
0.37
0.9
62.3
38.8
Minor 5ss
36.9
-1.5
2.9
51.8
44.6
Minor BPS
42.5
-0.7
2.3
50.07
43.9

Associated Gene:

Gene:
NCAPD2
Ensembl Gene ID:
ENSAPLG00000013121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013732
79286407 - 79307055
20649