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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79292283_79293215_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79292283 - 79293215
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATACTGTTAACA
Flanking Amino Acid:
ILGILKRLYIGKNHEDSPCD
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.4
0.53
1
66
44.4
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
54.5
0.14
2
67.86
38.2

Associated Gene:

Gene:
NCAPD2
Ensembl Gene ID:
ENSAPLG00000013121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013732
79286407 - 79307055
20649