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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79293426_79295275_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79293426 - 79295275
Intron Length:
1850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
ACTTCACTAATG
Flanking Amino Acid:
SKLMYENSVSVVQEAIEFFV
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
86.3
0.82
0.7
81
24.1
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
49.7
-0.1
2
59.76
42.1

Associated Gene:

Gene:
NCAPD2
Ensembl Gene ID:
ENSAPLG00000013121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013732
79286407 - 79307055
20649