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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79296961_79297197_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79296961 - 79297197
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCCTA
5'SS Class:
major
3'SS Sequence:
TTCTATTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATAAT
U12 Branch Point Sequence:
CCTCACATAATA
Flanking Amino Acid:
AAVMLLGLMARGKPEIVGSN
Intron Amino Acid Position:
765

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.3
42.2
Major BPS
66.4
0.41
1.1
66.3
36.5
Major PPT
81.2
0.7
0.8
76.1
32.2
Minor 5ss
36.5
-1.5
3.2
48.3
47.3
Minor BPS
48.3
-0.1
1.8
58.64
41.1

Associated Gene:

Gene:
NCAPD2
Ensembl Gene ID:
ENSAPLG00000013121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013732
79286407 - 79307055
20649