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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79301911_79302930_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79301911 - 79302930
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
GTGTCCTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
GTGTCCTGCACA
Flanking Amino Acid:
QNFFSELSNKGNAIYNLLPD
Intron Amino Acid Position:
1152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.7
83.7
31
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
66.8
0.38
1
60.7
40.3
Minor 5ss
21.7
-3.3
3.8
31.8
42.6
Minor BPS
56
0.18
2
69.13
42.9

Associated Gene:

Gene:
NCAPD2
Ensembl Gene ID:
ENSAPLG00000013121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013732
79286407 - 79307055
20649