Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79303026_79303794_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79303026 - 79303794

Intron Length:

769

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTATGTGAA

5'SS Class:

major

3'SS Sequence:

TTTTCCTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAG

U12 Branch Point Sequence:

GCTTTGCTATTT

Flanking Amino Acid:

VDEESFRTIMKHLFSYITKD

Intron Amino Acid Position:

1183

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

73.1

31.2

Major BPS

63.7

0.34

1.6

39.9

Major PPT

0.97

0.6

88.6

20.7

Minor 5ss

39.8

-1.1

3.1

48.3

42.4

Minor BPS

41.2

-0.5

2.4

60.32

43.9

Associated Gene:

Gene:

NCAPD2

Ensembl Gene ID:

ENSAPLG00000013121

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013732

79286407 - 79307055

20649