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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79303876_79305951_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79303876 - 79305951
Intron Length:
2076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCGTAT
U12 Branch Point Sequence:
CTTTTCGTATGA
Flanking Amino Acid:
EKLCQRFRTARNERQYRDLS
Intron Amino Acid Position:
1210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.2
30.7
Major BPS
66.5
0.41
1.4
65.7
43.2
Major PPT
80
0.67
0.7
72.2
32.4
Minor 5ss
36.9
-1.5
3.2
48.5
47.7
Minor BPS
44.6
-0.4
2.4
61.84
45

Associated Gene:

Gene:
NCAPD2
Ensembl Gene ID:
ENSAPLG00000013121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013732
79286407 - 79307055
20649