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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79306780_79306972_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79306780 - 79306972
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTACTCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TGGTTATTGACA
Flanking Amino Acid:
SSDEENSSEDEFSAELTEEE
Intron Amino Acid Position:
1369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
79
0.65
0.8
77.8
30.8
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
58.3
0.26
1.6
67.79
38.4

Associated Gene:

Gene:
NCAPD2
Ensembl Gene ID:
ENSAPLG00000013121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013732
79286407 - 79307055
20649