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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79311936_79313560_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79311936 - 79313560
Intron Length:
1625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
TCCGCCTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CCCTGTTTATCC
Flanking Amino Acid:
AMSLPGQRLQMLLSQLLPLD
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
60.8
44.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.3
0.52
0.8
64.4
36.5
Minor 5ss
28.4
-2.5
3.5
38
46.9
Minor BPS
46.4
-0.3
2
52.75
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027352
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034740
79311837 - 79313839
2003