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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79316450_79317086_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79316450 - 79317086
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCTCCTCATCT
Flanking Amino Acid:
MVKVGVNGFGRIGRLVT
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
60.2
39.4
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
87.9
0.85
0.6
81.4
30.6
Minor 5ss
31.7
-2.1
3.2
34
41.8
Minor BPS
59
0.36
1.9
75.91
46.6

Associated Gene:

Gene:
TAPBPL
Ensembl Gene ID:
ENSAPLG00000013511
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023369
79316282 - 79396324
80043
ENSAPLT00000020082
79316282 - 79365780
49499
ENSAPLT00000044654
79316282 - 79390586
74305
ENSAPLT00000014139
79316282 - 79356903
40622
ENSAPLT00000037890
79316282 - 79391134
74853
ENSAPLT00000025992
79316282 - 79329989
13708