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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79316450_79317503_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79316450 - 79317503
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
TTCTCCCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
GATGTCTGACCT
Flanking Amino Acid:
RQDGESRSQRVYMFKYDSTH
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
60.2
39.4
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
71.5
0.48
0.9
66.1
35.8
Minor 5ss
31.7
-2.1
3.2
34
41.8
Minor BPS
48.4
-0
1.8
66.34
44

Associated Gene:

Gene:
TAPBPL
Ensembl Gene ID:
ENSAPLG00000013511
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039689
79314082 - 79319774
5693