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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79317187_79317503_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79317187 - 79317503
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
GATGTCTGACCT
Flanking Amino Acid:
NDPFIDLNYMVYMFKYDSTH
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
71.5
0.48
0.9
66.1
35.8
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
48.4
-0
1.8
66.34
44

Associated Gene:

Gene:
TAPBPL
Ensembl Gene ID:
ENSAPLG00000013511
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020082
79316282 - 79365780
49499
ENSAPLT00000044654
79316282 - 79390586
74305
ENSAPLT00000014139
79316282 - 79356903
40622
ENSAPLT00000037890
79316282 - 79391134
74853
ENSAPLT00000025992
79316282 - 79329989
13708
ENSAPLT00000023369
79316282 - 79396324
80043