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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79317787_79317957_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79317787 - 79317957
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TCCCTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GGTTATCTAATC
Flanking Amino Acid:
GVFTTMEKAGAHLKGGAKRV
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74.7
41.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
86.7
0.83
0.7
79.5
32.5
Minor 5ss
41.3
-1
2.8
52.3
44.3
Minor BPS
49.2
-0
1.8
61.76
37.3

Associated Gene:

Gene:
TAPBPL
Ensembl Gene ID:
ENSAPLG00000013511
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023369
79316282 - 79396324
80043
ENSAPLT00000044654
79316282 - 79390586
74305
ENSAPLT00000020082
79316282 - 79365780
49499
ENSAPLT00000039689
79314082 - 79319774
5693
ENSAPLT00000014139
79316282 - 79356903
40622
ENSAPLT00000037890
79316282 - 79391134
74853
ENSAPLT00000025992
79316282 - 79329989
13708