About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79319138_79391047_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
79319138 - 79391047
Intron Length:
71910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGAAGATGACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGATGAA
U12 Branch Point Sequence:
AGATGATGAAGA
Flanking Amino Acid:
KGILAYTEDQVDHEETDCLL
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
60.3
0.26
1.2
51.7
43.9
Major PPT
50.1
0
1.2
40.7
47
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
40.5
-0.7
2.2
49.85
40.4

Associated Gene:

Gene:
TAPBPL
Ensembl Gene ID:
ENSAPLG00000013511
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037890
79316282 - 79391134
74853