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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79319373_79319704_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79319373 - 79319704
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CATACAGGAACA
Flanking Amino Acid:
LNDHFVKLVSWYDKQDGEK*
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.9
34.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
82.9
0.74
0.8
77.1
31.6
Minor 5ss
44.6
-0.6
2.5
57.8
40.7
Minor BPS
42.4
-0.5
2.3
55.7
42.6

Associated Gene:

Gene:
TAPBPL
Ensembl Gene ID:
ENSAPLG00000013511
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020082
79316282 - 79365780
49499
ENSAPLT00000014139
79316282 - 79356903
40622
ENSAPLT00000039689
79314082 - 79319774
5693
ENSAPLT00000025992
79316282 - 79329989
13708