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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79331913_79332089_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79331913 - 79332089
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TTATCCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TGCCCTTTATCC
Flanking Amino Acid:
CRRLITQSGDRKSPAFTPAS
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
83.2
0.75
0.8
77.8
30.6
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
56.8
0.19
1.6
64.32
41.3

Associated Gene:

Gene:
IFFO1
Ensembl Gene ID:
ENSAPLG00000026823
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039796
79330948 - 79333188
2241