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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79332221_79332346_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79332221 - 79332346
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGAGGA
5'SS Class:
major
3'SS Sequence:
CTCCCTTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTTAT
U12 Branch Point Sequence:
TATCTCTGCACC
Flanking Amino Acid:
EYQETIDQIELELATAKNDM
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
0.9
63.9
36.2
Major BPS
58.5
0.21
1.4
51.4
46
Major PPT
74.7
0.56
0.9
71.7
32.7
Minor 5ss
30.4
-2.2
3.2
38.3
46.7
Minor BPS
49.6
-0
1.9
65.8
39.3

Associated Gene:

Gene:
IFFO1
Ensembl Gene ID:
ENSAPLG00000026823
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039796
79330948 - 79333188
2241