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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79332443_79332774_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79332443 - 79332774
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGGTG
5'SS Class:
major
3'SS Sequence:
CTGCTCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TGCCTCTAAACA
Flanking Amino Acid:
AIAAAEVQGEQQDDSLEKVI
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.2
67.8
43.5
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
73.7
0.53
0.8
65.3
36.2
Minor 5ss
38.4
-1.3
3.7
55
49.2
Minor BPS
56
0.18
1.7
64.92
41.5

Associated Gene:

Gene:
IFFO1
Ensembl Gene ID:
ENSAPLG00000026823
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039796
79330948 - 79333188
2241