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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79343676_79343785_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79343676 - 79343785
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTGG
5'SS Class:
major
3'SS Sequence:
TCTTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTGCAG
U12 Branch Point Sequence:
TCTTCCTGCAGC
Flanking Amino Acid:
FSNAIPKAQKDEEPAVEAAS
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.6
46.7
Major BPS
40.6
-0.5
1.6
48.7
45.1
Major PPT
88.3
0.86
0.8
83.9
31
Minor 5ss
48.8
-0.1
2.6
65
46.2
Minor BPS
49.4
-0
2.2
66.78
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020826
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033502
79342422 - 79349654
7233