About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79343917_79344017_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79343917 - 79344017
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTCTATCATT
Flanking Amino Acid:
GLDFGKEGFTRFKDRRFHPS
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.5
35.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.8
0.8
0.7
77.7
31
Minor 5ss
27.4
-2.6
3.2
35.6
41.2
Minor BPS
52
0.14
2
76.08
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020826
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033502
79342422 - 79349654
7233