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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79344312_79344613_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79344312 - 79344613
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GCATCCTAACCT
Flanking Amino Acid:
SKDPAVKTNKDEKDILRCAH
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
72
0.55
1
71.8
31.4
Major PPT
87.6
0.85
0.6
85
22.6
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
51.9
0.14
2
69.24
47.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020826
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033502
79342422 - 79349654
7233