About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79345112_79345300_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79345112 - 79345300
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACCACCC
5'SS Class:
major
3'SS Sequence:
TGCCCTCCGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CTTTGCTGATGT
Flanking Amino Acid:
CAPGGKTSYIAQLMKNTGMI
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.2
54.5
43.1
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
66.1
0.36
1
61.7
34.9
Minor 5ss
37.7
-1.4
3.3
52.5
44.1
Minor BPS
44.9
-0.3
2.3
68.24
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020826
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033502
79342422 - 79349654
7233