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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79345794_79345883_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79345794 - 79345883
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAATCC
5'SS Class:
major
3'SS Sequence:
TTCTTTTGTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACGTTATTT
Flanking Amino Acid:
KLMDIFPLPELINFLEANEV
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
62.8
36.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86
0.81
0.8
80.2
37.3
Minor 5ss
37.2
-1.5
3.4
51.1
45.6
Minor BPS
53.6
0.19
2.3
80.47
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020826
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033502
79342422 - 79349654
7233