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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79347064_79347231_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79347064 - 79347231
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATAC
Flanking Amino Acid:
EKAALKQKSDRGGLSEDDSE
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.8
91.6
26.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
72.9
0.52
0.9
66.7
38.7
Minor 5ss
38.2
-1.3
3.4
56.9
47.4
Minor BPS
67.8
0.54
1.7
79.48
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020826
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033502
79342422 - 79349654
7233