About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79347276_79347567_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79347276 - 79347567
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GTTTCATTAATC
Flanking Amino Acid:
YGASSSEEEELLPIEKAALK
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
78.5
0.64
0.8
77.7
29.9
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
73.6
0.72
1.5
80.67
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020826
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033502
79342422 - 79349654
7233