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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79348418_79348502_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79348418 - 79348502
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTAAC
U12 Branch Point Sequence:
TGCTGCCTAACC
Flanking Amino Acid:
EVELARFLPHEEESGRRKLS
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
70.7
41.3
Major BPS
54.3
0.11
1.2
57.5
37.5
Major PPT
78.7
0.65
0.8
73.5
31.5
Minor 5ss
33.7
-1.9
2.9
38.4
41.6
Minor BPS
52.6
0.06
2.1
67.98
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020826
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033502
79342422 - 79349654
7233