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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79349371_79349478_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79349371 - 79349478
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTACC
5'SS Class:
major
3'SS Sequence:
CTCTGGTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TGTTGATTCACA
Flanking Amino Acid:
EPPPPPPPQQVAQQQ*
Intron Amino Acid Position:
1720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.7
36.9
Major BPS
75.8
0.64
1
65.8
41
Major PPT
78.3
0.64
0.9
71.2
38.5
Minor 5ss
37.6
-1.4
2.9
46.8
35.3
Minor BPS
48.1
-0.1
2.4
69.26
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023080
79349353 - 79378047
28695
ENSAPLT00000014884
79349353 - 79365780
16428
Gene:
Ensembl Gene ID:
ENSAPLG00000020826
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033502
79342422 - 79349654
7233