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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79351535_79351626_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79351535 - 79351626
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGAC
5'SS Class:
major
3'SS Sequence:
CTTGCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTCTGTTTATCT
Flanking Amino Acid:
MFNIADGGFTELHSLWQNEE
Intron Amino Acid Position:
1515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
60.6
39
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82
0.72
0.8
72.9
37.4
Minor 5ss
35.2
-1.7
3.6
50
46.5
Minor BPS
57.6
0.32
2
79.06
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023080
79349353 - 79378047
28695
ENSAPLT00000014884
79349353 - 79365780
16428