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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79354301_79354466_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79354301 - 79354466
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAG
U12 Branch Point Sequence:
TCCTCCTTAGCT
Flanking Amino Acid:
GDEDFDERSEAARRPSRKGL
Intron Amino Acid Position:
1183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
54.9
0.12
1.6
53.6
43.8
Major PPT
90.6
0.91
0.6
89.1
20
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
72.9
0.8
1.6
83.67
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023080
79349353 - 79378047
28695
ENSAPLT00000014884
79349353 - 79365780
16428