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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79357157_79357493_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79357157 - 79357493
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
TGTGTCTTATGT
Flanking Amino Acid:
IVRVELSPMQKKYYKYILTR
Intron Amino Acid Position:
784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
75
35.2
Major BPS
66.4
0.41
1
61.3
37
Major PPT
90.4
0.91
0.6
88.5
20.9
Minor 5ss
32.6
-2
3.3
40.4
40
Minor BPS
50
0.08
2
71.72
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014884
79349353 - 79365780
16428
ENSAPLT00000023080
79349353 - 79378047
28695