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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79357668_79357779_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79357668 - 79357779
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TATTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TTTTGCTGAATG
Flanking Amino Acid:
LLNFLTPERFHNLEGFLEEF
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.9
39.9
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
86.9
0.83
0.7
81.7
29.8
Minor 5ss
42.4
-0.8
3.1
65
39.9
Minor BPS
61.4
0.22
2
72.16
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023080
79349353 - 79378047
28695
ENSAPLT00000014884
79349353 - 79365780
16428