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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79357902_79359817_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79357902 - 79359817
Intron Length:
1916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTACTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCTAC
U12 Branch Point Sequence:
TACTCTCTACTT
Flanking Amino Acid:
AHRLKNNQSKFFRVLNGYSL
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
51.3
0.03
1.3
52.4
42.7
Major PPT
84.7
0.78
0.8
76.5
37.4
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
49.3
0.03
1.9
69.2
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023080
79349353 - 79378047
28695
ENSAPLT00000014884
79349353 - 79365780
16428