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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79362176_79362457_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79362176 - 79362457
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGGAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTGTGCTTAAGA
Flanking Amino Acid:
WMMIHRILNHSVDKKGNVHY
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.6
42.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.2
0.68
0.8
77.7
31
Minor 5ss
30.2
-2.3
3.3
38.2
47
Minor BPS
54.5
0.14
2.1
66.48
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023080
79349353 - 79378047
28695
ENSAPLT00000014884
79349353 - 79365780
16428