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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79364125_79364254_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79364125 - 79364254
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CCTATTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATTT
Flanking Amino Acid:
PEGKWSCPHCEKEGIQWEAK
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
75.2
0.57
0.8
69.7
30.9
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
64
0.52
1.7
84.31
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023080
79349353 - 79378047
28695
ENSAPLT00000014884
79349353 - 79365780
16428