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Intron Name: Anas_platyrhynchos_platyrhynchos_1_79365297_79365376_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
79365297 - 79365376

Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTGAGATAA

5'SS Class:
strong_major

3'SS Sequence:
CCTCTGTTCCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTCCAC

U12 Branch Point Sequence:
TTTCCACTCACA

Flanking Amino Acid:
LRKAKTKEGKGPNARRKPKA

Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
87.9
0.89
0.8
79.1
24.3

Major BPS
67.4
0.43
1.3
78.4
35.2

Major PPT
76.3
0.59
0.8
67.8
37.6

Minor 5ss
31.8
-2.1
3
37.8
47

Minor BPS
47.7
-0.1
2.3
71.21
40.3

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

79349353 - 79378047
28695

79349353 - 79365780
16428