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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79402247_79402955_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79402247 - 79402955
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCAGG
5'SS Class:
major
3'SS Sequence:
CACCCCGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTTTTCTCACCC
Flanking Amino Acid:
LQVFGKVAIQGTRESAFIHA
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.3
63.6
48.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
65.5
0.35
0.9
57.5
32.9
Minor 5ss
34.2
-1.8
2.7
40.7
45.2
Minor BPS
55.9
0.16
1.9
69.77
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015437
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016093
79397705 - 79404225
6521