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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79416916_79418938_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79416916 - 79418938
Intron Length:
2023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTGAGCTAC
5'SS Class:
major
3'SS Sequence:
CTCCTGCAGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GCCTCCTGCAGG
Flanking Amino Acid:
IFPLQQRKEDSPLSDSEYQL
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.9
0.26
1.3
58.1
37.8
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
61.6
0.26
1.1
57.6
37.6
Minor 5ss
40.2
-1.1
3
50.4
41
Minor BPS
42.6
-0.7
2.2
44.32
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029811
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026016
79412079 - 79418985
6907