About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79426297_79426621_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
79426297 - 79426621

Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAC|GTAAGCATT

5'SS Class:
major

3'SS Sequence:
CTTTCTCCTGCAG|T

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
GGTTCAT

U12 Branch Point Sequence:
ATTTGCTCACCT

Flanking Amino Acid:
TAQKKLKLVRTSTEYGMPSV

Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
76.4
0.62
1.3
81.8
38.5

Major BPS
67
0.42
1.4
71.4
45.1

Major PPT
86.5
0.82
0.7
81.2
23.9

Minor 5ss
46.7
-0.3
2.9
66
38.4

Minor BPS
51.5
0.12
2.2
78.58
43.6

Associated Gene:

Gene:
ING4

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

79425282 - 79434729
9448