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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79447969_79455095_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
79447969 - 79455095
Intron Length:
7127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCTTC
5'SS Class:
major
3'SS Sequence:
GCCCCGGTCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
CCCCGTGTGACG
Flanking Amino Acid:
SCVDSLMSNQGCRMCSLTFY
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.2
38.5
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
59.4
0.21
1
48.5
39.3
Minor 5ss
42.5
-0.8
3
50.6
46.1
Minor BPS
36.7
-1.1
2.2
34.52
41.1

Associated Gene:

Gene:
ZNF384
Ensembl Gene ID:
ENSAPLG00000015889
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048264
79444608 - 79466601
21994