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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79455174_79462295_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79455174 - 79462295
Intron Length:
7122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAGC
5'SS Class:
major
3'SS Sequence:
TTTTAACAAGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTTTTTTAACA
Flanking Amino Acid:
EDQHKDGKTYSSVSSGTNEA
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
63.9
42.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
65.1
0.34
1
61.5
39
Minor 5ss
25.8
-2.8
3.2
33.4
42.1
Minor BPS
79.3
0.92
1.1
82.25
33.1

Associated Gene:

Gene:
ZNF384
Ensembl Gene ID:
ENSAPLG00000015889
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048264
79444608 - 79466601
21994