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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79478173_79486029_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79478173 - 79486029
Intron Length:
7857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CCTTTCTTGATG
Flanking Amino Acid:
HGKSTAFQLNRS*
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
71.8
39.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
85.5
0.8
0.8
77.2
41.6
Minor 5ss
31.9
-2.1
2.9
43.6
43.3
Minor BPS
63
0.26
1.4
61.06
41.9

Associated Gene:

Gene:
PIANP
Ensembl Gene ID:
ENSAPLG00000021371
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044196
79478092 - 79487422
9331