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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79485847_79486029_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79485847 - 79486029
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CCGTCTCTAATT
Flanking Amino Acid:
HGKSTAFQLNRIPLVNL*
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
71.8
39.7
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
81.6
0.71
0.7
73.7
31.3
Minor 5ss
31.9
-2.1
2.9
43.6
43.3
Minor BPS
55
0.23
1.7
67.61
44.2

Associated Gene:

Gene:
PIANP
Ensembl Gene ID:
ENSAPLG00000021371
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022268
79484030 - 79487422
3393