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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79498159_79498244_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79498159 - 79498244
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GTGCCCTGACCC
Flanking Amino Acid:
ELLDMPAVRELADSEFSPVF
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
62.3
43.9
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
74.8
0.56
0.8
68.9
31.6
Minor 5ss
32.7
-2
3
39.3
46.1
Minor BPS
50.1
-0
1.8
61.79
43

Associated Gene:

Gene:
COPS7A
Ensembl Gene ID:
ENSAPLG00000001230
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001325
79497980 - 79500295
2316