Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79498933_79499400_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79498933 - 79499400

Intron Length:

468

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGAAGG

5'SS Class:

major

3'SS Sequence:

CTCTTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATAAAT

U12 Branch Point Sequence:

TAAGCTTTACCT

Flanking Amino Acid:

LSTITRTLQEWCQGCEVVLS

Intron Amino Acid Position:

177

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

0.9

64.2

41.6

Major BPS

74.5

0.61

79.6

29.1

Major PPT

85.5

0.8

0.7

80.5

24.8

Minor 5ss

27.6

-2.6

2.7

28.4

37.1

Minor BPS

58.5

0.34

1.7

73.6

43.3

Associated Gene:

Gene:

COPS7A

Ensembl Gene ID:

ENSAPLG00000001230

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018113

79493822 - 79500295

6474

ENSAPLT00000001325

79497980 - 79500295

2316